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Publications

2014

  • Loizides-Mangold, Ursula; Clément, Sophie; Alfonso-Garcia, Alba; Branche, Emilie; Conzelmann, Stéphanie; Parisot, Clotilde; Potma, Eric O.; Riezman, Howard; Negro, Francesco; Jhaveri, Ravi (2014) HCV 3a Core Protein Increases Lipid Droplet Cholesteryl Ester Content via a Mechanism Dependent on Sphingolipid Biosynthesis. .
  • Boeke, Dominik; Trautmann, Susanne; Meurer, Matthias; Wachsmuth, Malte; Godlee, Camilla; Knop, Michael; Kaksonen, Marko (2014) Quantification of cytosolic interactions identifies Ede1 oligomers as key organizers of endocytosis. .
  • Jaensch, Nina; Corrêa, Ivan R.; Watanabe, Reika (2014) Stable Cell Surface Expression of GPI-Anchored Proteins, but not Intracellular Transport, Depends on their Fatty Acid Structure. .
  • Rodius, Sophie; Nazarov, Petr V.; Nepomuceno-Chamorro, Isabel A.; Jeanty, Céline; González-Rosa, Juan; Ibberson, Mark; da Costa, Ricardo M.; Xenarios, Ioannis; Mercader, Nadia; Azuaje, Francisco (2014) Transcriptional response to cardiac injury in the zebrafish: systematic identification of genes with highly concordant activity across in vivo models. .
  • Dornbusch, Tino; Michaud, Olivier; Xenarios, Ioannis; Fankhauser, Christian (2014) Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation. .
  • Merrifield, Christien J.; Kaksonen, Marko (2014) Endocytic Accessory Factors and Regulation of Clathrin-Mediated Endocytosis. .
  • Roux, Aur (2014) Reaching a consensus on the mechanism of dynamin?. .
  • Loubéry, Sylvain; Seum, Carole; Moraleda, Ana; Daeden, Alicia; Fürthauer, Maximilian; Gonzalez-Gaitan, Marcos (2014) Uninflatable and Notch Control the Targeting of Sara Endosomes during Asymmetric Division. .
  • da Silveira dos Santos, Aline Xavier; Riezman, Isabelle; Aguilera-Romero, Maria-Auxiliadora; David, Fabrice; Piccolis, Manuele; Loewith, Robbie; Schaad, Olivier; Riezman, Howard (2014) Systematic lipidomic analysis of yeast protein kinase and phosphatase mutants reveals novel insights into regulation of lipid homeostasis. .
  • Seguin-Estevez, Queralt; Dunand-Sauthier, Isabelle; Lemeille, Sylvain; Iseli, Christian; Ibberson, Mark; Ioannidis, Vassilios; Schmid, Christoph D.; Rousseau, Philippe; Barras, Emmanuèle; Geinoz, Antoine; Xenarios, Ioannis; Acha-Orbea, Hans; Reith, Walter (2014) Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing. .
  • Rausell, Antonio; Mohammadi, Pejman; McLaren, Paul J.; Bartha, Istvan; Xenarios, Ioannis; Fellay, Jacques; Telenti, Amalio; Quintana-Murci, Lluis (2014) Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes. .
  • Gonzalez-Gaitan, Marcos; Julicher, Frank (2014) The Role of Endocytosis during Morphogenetic Signaling. .
  • Griss, Johannes; Jones, Andrew R.; Sachsenberg, Timo; Walzer, Mathias; Gatto, Laurent; Hartler, Jürgen; Thallinger, Gerhard G.; Salek, Reza M.; Steinbeck, Christoph; Neuhauser, Nadin; Cox, Jürgen; Neumann, Steffen; Fan, Jun; Reisinger, Florian; Xu, Qing-Wei; del Toro, Noemi; Perez-Riverol, Yasset; Ghali, Fawaz; Bandeira, Nuno; Xenarios, Ioannis; Kohlbacher, Oliver; Vizcaino, Juan Antonio; Hermjakob, Henning (2014) The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience. .
  • Famiglietti, Maria Livia; Estreicher, Anne; Gos, Arnaud; Bolleman, Jerven; Géhant, Sébastien; Breuza, Lionel; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Bougueleret, Lydie; Xenarios, Ioannis (2014) Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation. .
  • Roppolo, Daniele; Boeckmann, Brigitte; Pfister, Alexandre; Boutet, Emmanuel; Rubio, Maria C.; Denervaud-Tendon, Valerie; Vermeer, Joop E. M.; Gheyselinck, Jacqueline; Xenarios, Ioannis; Geldner, Niko (2014) Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family. .
  • Crouse, Josh; Bedenikovic, Gregor; Wiesel, Melanie; Ibberson, Mark; Xenarios, Ioannis; Von Laer, Dorothee; Kalinke, Ulrich; Vivier, Eric; Jonjic, Stipan; Oxenius, Annette (2014) Type I Interferons Protect T Cells against NK Cell Attack Mediated by the Activating Receptor NCR1. .
  • Xiol, Jordi; Spinelli, Pietro; Laussmann, Maike A.; Homolka, David; Yang, Zhaolin; Cora, Elisa; Couté, Yohann; Conn, Simon; Kadlec, Jan; Sachidanandam, Ravi; Kaksonen, Marko; Cusack, Stephen; Ephrussi, Anne; Pillai, Ramesh S. (2014) RNA Clamping by Vasa Assembles a piRNA Amplifier Complex on Transposon Transcripts. .
  • Stockinger, Heinz; Altenhoff, Adrian M.; Arnold, Konstantin; Bairoch, Amos; Bastian, Frederic; Bergmann, Sven; Bougueleret, Lydie; Bucher, Philipp; Delorenzi, Mauro; Lane, Lydie; Le Mercier, Philippe; Lisacek, Frederique; Michielin, Olivier; Palagi, Patricia M.; Rougemont, Jacques; Schwede, Torsten; von Mering, Christian; van Nimwegen, Erik; Walther, Daniel; Xenarios, Ioannis; Zavolan, Mihaela; Zdobnov, Evgeny M.; Zoete, Vincent; Appel, Ron D. (2014) Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. .
  • Montagne, Chrystelle; Gonzalez-Gaitan, Marcos (2014) Sara endosomes and the asymmetric division of intestinal stem cells. .
  • Wartlick, Ortrud; Julicher, Frank; Gonzalez-Gaitan, Marcos (2014) Growth control by a moving morphogen gradient during Drosophila eye development. .
  • Marti-Solano, Maria; Birney, Ewan; Bril, Antoine; Pasqua, Oscar Della; Kitano, Hiroaki; Mons, Barend; Xenarios, Ioannis; Sanz, Ferran (2014) Integrative knowledge management to enhance pharmaceutical R&D. .
  • Rausell, Antonio; Mohammadi, Pejman; McLaren, Paul J.; Xenarios, Ioannis; Fellay, Jacques; Telenti, Amalio (2014) Analysis of stop-gain and frameshift variants in human innate immunity genes. .
  • Alfaiz, Ali Abdullah; Micale, Lucia; Mandriani, Barbara; Augello, Bartolomeo; Pellico, Maria Teresa; Chrast, Jacqueline; Xenarios, Ioannis; Zelante, Leopoldo; Merla, Giuseppe; Reymond, Alexandre (2014) TBC1D7 Mutations are Associated with Intellectual Disability, Macrocrania, Patellar Dislocation, and Celiac Disease. .
  • Vizcaíno, Juan A.; Deutsch, Eric W.; Wang, Rui; Csordas, Attila; Reisinger, Florian; Ríos, Daniel; Dianes, José A.; Sun, Zhi; Farrah, Terry; Bandeira, Nuno; Binz, Pierre-Alain; Xenarios, Ioannis; Eisenacher, Martin; Mayer, Gerhard; Gatto, Laurent; Campos, Alex; Chalkley, Robert J.; Kraus, Hans-Joachim; Albar, Juan Pablo; Martinez-Bartolomé, Salvador; Apweiler, Rolf; Omenn, Gilbert S.; Martens, Lennart; Jones, Andrew R.; Hermjakob, Henning (2014) ProteomeXchange provides globally coordinated proteomics data submission and dissemination. .
  • Blaskovic, Sanja; Adibekian, Alexander; Blanc, Mathieu; van der Goot*, Gisou F. (2014) Mechanistic effects of protein palmitoylation and the cellular consequences thereof. .
  • Brach, Thorsten; Godlee, Camilla; Moeller-Hansen, Iben; Boeke, Dominik; Kaksonen, Marko (2014) The Initiation of Clathrin-Mediated Endocytosis Is Mechanistically Highly Flexible. .
  • Sankar, Martial; Nieminen, Kaisa; Ragni, Laura; Xenarios, Ioannis; Hardtke, Christian S (2014) Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. .
  • Lakshminarayanan, Rajamani; Liu, Shouping; Li, Jianguo; Nandhakumar, Muruganantham; Aung, Thet Tun; Goh, Eunice; Chang, Jamie Ya Ting; Saraswathi, Padhmanaban; Tang, Charles; Safie, Siti Radiah Binte; Lin, Lim Yih; Riezman, Howard; Lei, Zhou; Verma, Chandra S.; Beuerman, Roger W.; Khan, Rizwan H. (2014) Synthetic Multivalent Antifungal Peptides Effective against Fungi. .
  • Prifti, Efthymia; Reymond, Luc; Umebayashi, Miwa; Hovius, Ruud; Riezman, Howard; Johnsson, Kai (2014) A Fluorogenic Probe for SNAP-Tagged Plasma Membrane Proteins Based on the Solvatochromic Molecule Nile Red. .
  • Loubéry, Sylvain; González-Gaitán, Marcos (2014) Monitoring Notch/Delta Endosomal Trafficking and Signaling in Drosophila. .
  • Kajiwara, Kentaro; Ikeda, Atsuko; Aguilera-Romero, Auxiliadora; Castillon, Guillaume A.; Kagiwada, Satoshi; Hanada, Kentaro; Riezman, Howard; Muñiz, Manuel; Funato, Kouichi (2014) Osh proteins regulate COPII-mediated vesicular transport of ceramide from the endoplasmic reticulum in budding yeast. .
  • Aguilera-Romero, Auxiliadora; Gehin, Charlotte; Riezman, Howard (2014) Sphingolipid homeostasis in the web of metabolic routes. .