AVƵ

2012

  • Friedrich, Nikolas; Hagedorn, Monica; Soldati-Favre, Dominique; Soldati, Thierry (2012) Prison Break: Pathogens' Strategies To Egress from Host Cells. .
  • Le Martelot, Gwendal; Canella, Donatella; Symul, Laura; Migliavacca, Eugenia; Gilardi, Federica; Liechti, Robin; Martin, Olivier; Harshman, Keith; Delorenzi, Mauro; Desvergne, Béatrice; Herr, Winship; Deplancke, Bart; Schibler, Ueli; Rougemont, Jacques; Guex, Nicolas; Hernandez, Nouria; Naef, Felix; the CycliX consortium, (2012) Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles. .
  • Fernandez, Paula; Solenthaler, Max; Spertini, Olivier; Quarroz, Stephane; Rovo, Alicia; Lovey, Pierre-Yves; Leoncini, Leda; Ruault-Jungblut, Sylvie; D?Asaro, Mathilde; Schaad, Olivier; Docquier, Mylène; Descombes, Patrick; Matthes, Thomas; Starczynowski, Daniel T. (2012) Using Digital RNA Counting and Flow Cytometry to Compare mRNA with Protein Expression in Acute Leukemias. .
  • Morlot, Sandrine; Galli, Valentina; Klein, Marius; Chiaruttini, Nicolas; Manzi, John; Humbert, Frédéric; Dinis, Luis; Lenz, Martin; Cappello, Giovanni; Roux, Aurélien (2012) Membrane Shape at the Edge of the Dynamin Helix Sets Location and Duration of the Fission Reaction. .
  • Dieckmann, Régis; Gueho, Aurélie; Monroy, Roger; Ruppert, Thomas; Bloomfield, Gareth; Soldati, Thierry (2012) The Balance in the Delivery of ER Components and the Vacuolar Proton Pump to the Phagosome Depends on Myosin IK in Dictyostelium. .
  • Skruzny, Michal; Brach, Thorsten; Ciuffa, Rodolfo; Rybina, Sofia; Wachsmuth, Malte; Kaksonen, Marko (2012) Molecular basis for coupling the plasma membrane to the actin cytoskeleton during clathrin-mediated endocytosis. .
  • Kicheva, Anna; Bollenbach, Tobias; Wartlick, Ortrud; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2012) Investigating the principles of morphogen gradient formation: from tissues to cells. .
  • Kukulski, Wanda; Schorb, Martin; Kaksonen, Marko; Briggs, John A.G. (2012) Plasma Membrane Reshaping during Endocytosis Is Revealed by Time-Resolved Electron Tomography. .
  • Kukulski, Wanda Schorb, Martin Welsch, Sonja Picco, Andrea Kaksonen, Marko Briggs, John A.G. (2012) Precise, Correlated Fluorescence Microscopy and Electron Tomography of Lowicryl Sections Using Fluorescent Fiducial Markers. .
  • Santos, Aline X. S.; Riezman, Howard (2012) Yeast as a model system for studying lipid homeostasis and function. .
  • Kornmann, Benoît; Roux, Aurélien (2012) Lipids as organizers of cell membranes. .
  • Gruenberg, Jean (2012) An MBoC Favorite: Functional interactions between sphingolipids and sterols in biological membranes regulating cell physiology. .
  • Jarmoszewicz, Katarzyna; Łukasiak, Katarzyna; Riezman, Howard; Kaminska, Joanna; Polymenis, Michael (2012) Rsp5 Ubiquitin Ligase Is Required for Protein Trafficking in Saccharomyces cerevisiae COPI Mutants. .
  • Hornitschek, Patricia; Kohnen, Markus V.; Lorrain, Séverine; Rougemont, Jacques; Ljung, Karin; López-Vidriero, Irene; Franco-Zorrilla, José M.; Solano, Roberto; Trevisan, Martine; Pradervand, Sylvain; Xenarios, Ioannis; Fankhauser, Christian (2012) Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. .
  • Pons, Véronique; Ustunel, Cansel; Rolland, Corinne; Torti, Eleonora; Parton, Robert G.; Gruenberg, Jean; Johannes, Ludger (2012) SNX12 Role in Endosome Membrane Transport. .
  • Kobayashi, Tomonori; Komatsu, Toru; Kamiya, Mako; Campos, Cláudia; González-Gaitán, Marcos; Terai, Takuya; Hanaoka, Kenjiro; Nagano, Tetsuo; Urano, Yasuteru (2012) Highly Activatable and Environment-Insensitive Optical Highlighters for Selective Spatiotemporal Imaging of Target Proteins. .
  • Tollis, Sylvain Gopaldass, Navin Soldati, Thierry Endres, Robert G. (2012) How One Cell Eats Another: Principles of Phagocytosis. .
  • Artimo, Panu; Jonnalagedda, Manohar; Arnold, Konstantin; Baratin, Delphine; Csardi, Gabor; de Castro, Edouard; Duvaud, Séverine; Flegel, Volker; Fortier, Arnaud; Gasteiger, Elisabeth; Grosdidier, Aurélien; Hernandez, Céline; Ioannidis, Vassilios; Kuznetsov, Dmitry; Liechti, Robin; Moretti, Sébastien; Mostaguir, Khaled; Redaschi, Nicole; Rossier, Grégoire; Xenarios, Ioannis; Stockinger, Heinz (2012) ExPASy: SIB bioinformatics resource portal. .
  • Loizides-Mangold, Ursula; David, Fabrice P. A.; Nesatyy, Victor J.; Kinoshita, Taroh; Riezman, Howard (2012) Glycosylphosphatidylinositol anchors regulate glycosphingolipid levels. .
  • Epstein, Sharon; Castillon, Guillaume A.; Qin, Yongmei; Riezman, Howard (2012) An essential function of sphingolipids in yeast cell division. .
  • Snijder, Berend; Sacher, Raphael; Rämö, Pauli; Liberali, Prisca; Mench, Karin; Wolfrum, Nina; Burleigh, Laura; Scott, Cameron C.; Verheije, Monique H.; Mercer, Jason; Moese, Stefan; Heger, Thomas; Theusner, Kristina; Jurgeit, Andreas; Lamparter, David; Balistreri, Giuseppe; Schelhaas, Mario; De Haan, Cornelis A. M.; Marjomäki, Varpu; Hyypiä, Timo; Rottier, Peter J. M.; Sodeik, Beate; Marsh, Mark; Gruenberg, Jean; Amara, Ali; Greber, Urs; Helenius, Ari; Pelkmans, Lucas (2012) Single-cell analysis of population context advances RNAi screening at multiple levels. .
  • Soldati, Thierry; Neyrolles, Olivier (2012) Mycobacteria and the Intraphagosomal Environment: Take It With a Pinch of Salt(s)!. .
  • Berchtold, Doris; Piccolis, Manuele; Chiaruttini, Nicolas; Riezman, Isabelle; Riezman, Howard; Roux, Aurélien; Walther, Tobias C.; Loewith, Robbie (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. .
  • Alonso Doval, David; Fin, Andrea; Takahashi-Umebayashi, Miwa; Riezman, Howard; Roux, Aurelien; Sakai, Naomi; Matile, Stefan (2012) Amphiphilic Dynamic NDI and PDI Probes:  Imaging Microdomains in Giant Unilamellar Vesicles. .
  • Klionsky, Daniel J.; Abdalla, Fabio C.; Abeliovich, Hagai; Abraham, Robert T.; ..., ; Soldati, Thierry; et al., (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. .
  • Orchard, Sandra; Kerrien, Samuel; Abbani, Sara; Aranda, Bruno; Bhate, Jignesh; Bidwell, Shelby; Bridge, Alan; Briganti, Leonardo; Brinkman, Fiona; Cesareni, Gianni; Chatr-aryamontri, Andrew; Chautard, Emilie; Chen, Carol; Dumousseau, Marine; Goll, Johannes; Hancock, Robert; Hannick, Linda I.; Jurisica, Igor; Khadake, Jyoti; Lynn, David J.; Mahadevan, Usha; Perfetto, Livia; Raghunath, Arathi; Ricard-Blum, Sylvie; Roechert, Bernd; Salwinski, Lukasz; Stümpflen, Volker; Tyers, Mike; Uetz, Peter; Xenarios, Ioannis; Hermjakob, Henning (2012) Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. .
  • Jungo, Florence; Bougueleret, Lydie; Xenarios, Ioannis; Poux, Sylvain (2012) The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data. .
  • Burge, Sarah; Attwood, Teresa K.; Bateman, Alex; Berardini, Tanya Z.; Cherry, Michael; O'Donovan, Claire; Xenarios, loannis; Gaudet, Pascale (2012) Biocurators and Biocuration: surveying the 21st century challenges. .
  • Brankatschk, Ben; Wichert, Sven P.; Johnson, Shem D.; Schaad, Olivier; Rossner, Moritz J.; Gruenberg, Jean (2012) Regulation of the EGF Transcriptional Response by Endocytic Sorting. .
  • Epstein, Sharon; Kirkpatrick, Clare L.; Castillon, Guillaume A.; Muniz, Manuel; Riezman, Isabelle; David, Fabrice P. A.; Wollheim, Claes B.; Riezman, Howard (2012) Activation of the unfolded protein response pathway causes ceramide accumulation in yeast and INS-1E insulinoma cells. .
  • Lima, Wanessa C.; Leuba, Florence; Soldati, Thierry; Cosson, Pierre (2012) Mucolipin controls lysosome exocytosis in Dictyostelium. .
  • Essid, Miriam; Gopaldass, Navin; Yoshida, Kunito; Merrifield, Christien; Soldati, Thierry (2012) Rab8a regulates the exocyst-mediated kiss-and-run discharge of the Dictyostelium contractile vacuole. .
  • Bissig, Christin Johnson, Shem Gruenberg, Jean (2012) Studying Lipids Involved in the Endosomal Pathway. .
  • Jennemann, Richard; Rabionet, Mariona; Gorgas, Karin; Epstein, Sharon; Dalpke, Alexander; Rothermel, Ulrike; Bayerle, Aline; van der Hoeven, Franciscus; Imgrund, Silke; Kirsch, Joachim; Nickel, Walter; Willecke, Klaus; Riezman, Howard; Grone, Hermann-Josef; Sandhoff, Roger (2012) Loss of ceramide synthase 3 causes lethal skin barrier disruption. .
  • Wartlick, Ortrud; Mumcu, Peer; Julicher, Frank; Gonzalez-Gaitan, Marcos (2012) Response to Comment on “Dynamics of Dpp Signaling and Proliferation Control”. .
  • Sansone, Susanna-Assunta; Rocca-Serra, Philippe; Field, Dawn; Maguire, Eamonn; Taylor, Chris; Hofmann, Oliver; Fang, Hong; Neumann, Steffen; Tong, Weida; Amaral-Zettler, Linda; Begley, Kimberly; Booth, Tim; Bougueleret, Lydie; Burns, Gully; Chapman, Brad; Clark, Tim; Coleman, Lee-Ann; Copeland, Jay; Das, Sudeshna; de Daruvar, Antoine; de Matos, Paula; Dix, Ian; Edmunds, Scott; Evelo, Chris T.; Forster, Mark J.; Gaudet, Pascale; Gilbert, Jack; Goble, Carole; Griffin, Julian L.; Jacob, Daniel; Kleinjans, Jos; Harland, Lee; Haug, Kenneth; Hermjakob, Henning; Sui, Shannan J. Ho; Laederach, Alain; Liang, Shaoguang; Marshall, Stephen; McGrath, Annette; Merrill, Emily; Reilly, Dorothy; Roux, Magali; Shamu, Caroline E.; Shang, Catherine A.; Steinbeck, Christoph; Trefethen, Anne; Williams-Jones, Bryn; Wolstencroft, Katherine; Xenarios, Ioannis; Hide, Winston (2012) Toward interoperable bioscience data. .
  • Jaiswal, Pundrik; Soldati, Thierry; Thewes, Sascha; Baskar, Ramamurthy (2012) Regulation of aggregate size and pattern by adenosine and caffeine in cellular slime molds. .
  • Sorre, Benoît; Callan-Jones, Andrew; Manzi, John; Goud, Bruno; Prost, Jacques; Bassereau, Patricia; Roux, Aurélien (2012) Nature of curvature coupling of amphiphysin with membranes depends on its bound density. .
  • Saurat, Jean-Hilaire; Kaya, Guerkan; Saxer-Sekulic, Nikolina; Pardo, Bruno; Becker, Minerva; Fontao, Lionel; Mottu, Florence; Carraux, Pierre; Pham, Xuan-Cuong; Barde, Caroline; Fontao, Fabienne; Zennegg, Markus; Schmid, Peter; Schaad, Olivier; Descombes, Patrick; Sorg, Olivier (2012) The Cutaneous Lesions of Dioxin Exposure: Lessons from the Poisoning of Victor Yushchenko. .
  • Nikolaev, Sergey I.; Rimoldi, Donata; Iseli, Christian; Valsesia, Armand; Robyr, Daniel; Gehrig, Corinne; Harshman, Keith; Guipponi, Michel; Bukach, Olesya; Zoete, Vincent; Michielin, Olivier; Muehlethaler, Katja; Speiser, Daniel; Beckmann, Jacques S.; Xenarios, Ioannis; Halazonetis, Thanos D.; Jongeneel, C. Victor; Stevenson, Brian J.; Antonarakis, Stylianos E (2012) Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. .
  • The Gene Ontology Consortium, (2012) The Gene Ontology: enhancements for 2011. .
  • Alcántara, Rafael; Axelsen, Kristian B.; Morgat, Anne; Belda, Eugeni; Coudert, Elisabeth; Bridge, Alan; Cao, Hong; de Matos, Paula; Ennis, Marcus; Turner, Steve; Owen, Gareth; Bougueleret, Lydie; Xenarios, Ioannis; Steinbeck, Christoph (2012) Rhea—a manually curated resource of biochemical reactions. .
  • Dimmer, Emily C.; Huntley, Rachael P.; Alam-Faruque, Yasmin; Sawford, Tony; O'Donovan, Claire; Martin, Maria J.; Bely, Benoit; Browne, Paul; Mun Chan, Wei; Eberhardt, Ruth; Gardner, Michael; Laiho, Kati; Legge, Duncan; Magrane, Michele; Pichler, Klemens; Poggioli, Diego; Sehra, Harminder; Auchincloss, Andrea; Axelsen, Kristian; Blatter, Marie-Claude; Boutet, Emmanuel; Braconi-Quintaje, Silvia; Breuza, Lionel; Bridge, Alan; Coudert, Elizabeth; Estreicher, Anne; Famiglietti, Livia; Ferro-Rojas, Serenella; Feuermann, Marc; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; James, Janet; Jimenez, Silvia; Jungo, Florence; Keller, Guillaume; Lemercier, Phillippe; Lieberherr, Damien; Masson, Patrick; Moinat, Madelaine; Pedruzzi, Ivo; Poux, Sylvain; Rivoire, Catherine; Roechert, Bernd; Schneider, Michael; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Bougueleret, Lydie; Argoud-Puy, Ghislaine; Cusin, Isabelle; Duek- Roggli, Paula; Xenarios, Ioannis; Apweiler, Rolf (2012) The UniProt-GO Annotation database in 2011. .
  • Morgat, Anne; Coissac, Eric; Coudert, Elisabeth; Axelsen, Kristian B.; Keller, Guillaume; Bairoch, Amos; Bridge, Alan; Bougueleret, Lydie; Xenarios, Ioannis; Viari, Alain (2012) UniPathway: a resource for the exploration and annotation of metabolic pathways. .
  • The UniProt Consortium, (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). .
  • Gopaldass, Navin; Patel, Devang; Kratzke, Ramona; Dieckmann, Regis; Hausherr, Stéphanie; Hagedorn, Monica; Monroy, Roger; Krüger, Julia; Neuhaus, Eva M.; Hoffmann, Eik; Hille, Katja; Kuznetsov, Sergei A.; Soldati, Thierry (2012) Dynamin A, Myosin IB and Abp1 Couple Phagosome Maturation to F-Actin Binding. .
  • Falguières, Thomas; Castle, David; Gruenberg, Jean (2012) Regulation of the MVB Pathway by SCAMP3. .
  • Garg, Abhishek Mohanram, Kartik De Micheli, Giovanni Xenarios, Ioannis (2012) Implicit Methods for Qualitative Modeling of Gene Regulatory Networks. .