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Publications

2011

  • Kapur, Karen; Schüpbach, Thierry; Xenarios, Ioannis; Kutalik, Zoltán; Bergmann, Sven; Xiong, Momiao (2011) Comparison of Strategies to Detect Epistasis from eQTL Data. .
  • Riba-Grognuz, Oksana; Keller, Laurent; Falquet, Laurent; Xenarios, Ioannis; Wurm, Yannick (2011) Visualization and quality assessment of de novo genome assemblies. .
  • Alvarez-Vasquez, Fernando; Riezman, Howard; Hannun, Yusuf A.; Voit, Eberhard O.; Zhang, Zhengguang (2011) Mathematical Modeling and Validation of the Ergosterol Pathway in Saccharomyces cerevisiae. .
  • Montenegro, Javier; Gehin, Charlotte; Bang, Eun-Kyoung; Fin, Andrea; Alonso Doval, David; Riezman, Howard; Sakai, Naomi; Matile, Stefan (2011) Conceptually New Entries into Cells. .
  • Takahashi-Umebayashi, Miwa; Pineau, Ludovic; Hannich, Thomas; Zumbuehl, Andreas; Alonso Doval, David; Matile, Stefan; Heinis, Christian; Turcatti, Gerardo; Loewith, Robbie; Roux, Aurelien; Reymond, Luc; Johnsson, Kai; Riezman, Howard (2011) Chemical Biology Approaches to Membrane Homeostasis and Function. .
  • Moreau, Dimitri; Scott, Cameron; Gruenberg, Jean (2011) A Novel Strategy to Identify Drugs that Interfere with Endosomal Lipids. .
  • Sturzenegger, Susi; Johnsson, Kai; Riezman, Howard (2011) NCCR Chemical Biology: Interdisciplinary Research Excellence, Outreach, Education, and New Tools for Switzerland. .
  • Aumeier, Charlotte Menzel, Diedrik (2011) Secretion in the Diatoms. .
  • Castanon, Irinka; González-Gaitán, Marcos (2011) Integrating levels of complexity: a trend in developmental biology. .
  • Lissina, Elena; Young, Brian; Urbanus, Malene L.; Guan, Xue Li; Lowenson, Jonathan; Hoon, Shawn; Baryshnikova, Anastasia; Riezman, Isabelle; Michaut, Magali; Riezman, Howard; Cowen, Leah E.; Wenk, Markus R.; Clarke, Steven G.; Giaever, Guri; Nislow, Corey; Cooper, Sara J. (2011) A Systems Biology Approach Reveals the Role of a Novel Methyltransferase in Response to Chemical Stress and Lipid Homeostasis. .
  • Scott, Cameron C; Bissig, Christin; Gruenberg, Jean (2011) Duelling functions of the V-ATPase. .
  • Castanon, Irinka; González-Gaitán, Marcos (2011) Oriented cell division in vertebrate embryogenesis. .
  • Wartlick, Ortrud; González-Gaitán, Marcos (2011) The missing link: implementation of morphogenetic growth control on the cellular and molecular level. .
  • Ternes, Philipp; Feussner, Kirstin; Werner, Stephanie; Lerche, Jennifer; Iven, Tim; Heilmann, Ingo; Riezman, Howard; Feussner, Ivo (2011) Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana. .
  • Wartlick, Ortrud; Mumcu, Peer; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2011) Understanding morphogenetic growth control – lessons from flies. .
  • Lelièvre, Elise C.; Lek, Madelen; Boije, Henrik; Houille-Vernes, Laura; Brajeul, Valérie; Slembrouck, Amélie; Roger, Jérôme E.; Sahel, José-Alain; Matter, Jean-Marc; Sennlaub, Florian; Hallböök, Finn; Goureau, Olivier; Guillonneau, Xavier (2011) Ptf1a/Rbpj complex inhibits ganglion cell fate and drives the specification of all horizontal cell subtypes in the chick retina. .
  • Fujita, Morihisa; Watanabe, Reika; Jaensch, Nina; Romanova-Michaelides, Maria; Satoh, Tadashi; Kato, Masaki; Riezman, Howard; Yamaguchi, Yoshiki; Maeda, Yusuke; Kinoshita, Taroh (2011) Sorting of GPI-anchored proteins into ER exit sites by p24 proteins is dependent on remodeled GPI. .
  • Boeckmann, Brigitte; Robinson-Rechavi, Marc; Xenarios, Ioannis; Dessimoz, Christophe (2011) Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. .
  • Brankatschk, Ben; Pons, Véronique; Parton, Robert G.; Gruenberg, Jean; Rappoport, Joshua Z. (2011) Role of SNX16 in the Dynamics of Tubulo-Cisternal Membrane Domains of Late Endosomes. .
  • Di Tommaso, Paolo; Moretti, Sebastien; Xenarios, Ioannis; Orobitg, Miquel; Montanyola, Alberto; Chang, Jia-Ming; Taly, Jean-François; Notredame, Cedric (2011) T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. .
  • Souza, Cleiton M.; Schwabe, Tatjana M.E.; Pichler, Harald; Ploier, Birgit; Leitner, Erich; Guan, Xue Li; Wenk, Markus R.; Riezman, Isabelle; Riezman, Howard (2011) A stable yeast strain efficiently producing cholesterol instead of ergosterol is functional for tryptophan uptake, but not weak organic acid resistance. .
  • Castillon, Guillaume A.; Aguilera-Romero, Auxiliadora; Manzano-Lopez, Javier; Epstein, Sharon; Kajiwara, Kentaro; Funato, Kouichi; Watanabe, Reika; Riezman, Howard; Muniz, Manuel (2011) The yeast p24 complex regulates GPI-anchored protein transport and quality control by monitoring anchor remodeling. .
  • Shlomovitz, Roie; Gov, Nir S.; Roux, Aurélien (2011) Membrane-mediated interactions and the dynamics of dynamin oligomers on membrane tubes. .
  • Carnell, Michael; Zech, Tobias; Calaminus, Simon D.; Ura, Seiji; Hagedorn, Monica; Johnston, Simon A.; May, Robin C.; Soldati, Thierry; Machesky, Laura M.; Insall, Robert H. (2011) Actin polymerization driven by WASH causes V-ATPase retrieval and vesicle neutralization before exocytosis. .
  • Dunand-Sauthier, Isabelle; Santiago-Raber, Marie-Laure; Capponi, Leonardo; Vejnar, Charles E.; Schaad, Olivier; Irla, Magali; Seguin-Estevez, Queralt; Descombes, Patrick; Zdobnov, Evgeny M.; Acha-Orbea, Hans; Reith, Walter (2011) Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function. .
  • Laulagnier, Karine; Schieber, Nicole L.; Maritzen, Tanja; Haucke, Volker; Parton, Robert G.; Gruenberg, Jean (2011) Role of AP1 and Gadkin in the traffic of secretory endo-lysosomes. .
  • Valsesia, Armand; Rimoldi, Donata; Martinet, Danielle; Ibberson, Mark; Benaglio, Paola; Quadroni, Manfredo; Waridel, Patrice; Gaillard, Muriel; Pidoux, Mireille; Rapin, Blandine; Rivolta, Carlo; Xenarios, Ioannis; Simpson, Andrew J. G.; Antonarakis, Stylianos E.; Beckmann, Jacques S.; Jongeneel, C. Victor; Iseli, Christian; Stevenson, Brian J.; Krahe, Ralf (2011) Network-Guided Analysis of Genes with Altered Somatic Copy Number and Gene Expression Reveals Pathways Commonly Perturbed in Metastatic Melanoma. .
  • Semrau, Stefan; Holtzer, Laurent; González-Gaitán, Marcos; Schmidt, Thomas (2011) Quantification of Biological Interactions with Particle Image Cross-Correlation Spectroscopy (PICCS). .
  • Wurm, Yannick; Wang, John; Riba-Grognuz, Oksana; Corona, Miguel; Nygaard, Sanne; Hunt, Brendan G.; Ingram, Krista K.; Falquet, Laurent; Nipitwattanaphon, Mingkwan; Gotzek, Dietrich; Dijkstra, Michiel B.; Oettler, Jan; Comtesse, Fabien; Shih, Cheng-Jen; Wu, Wen-Jer; Yang, Chin-Cheng; Thomas, Jerome; Beaudoing, Emmanuel; Pradervand, Sylvain; Flegel, Volker; Cook, Erin D.; Fabbretti, Roberto; Stockinger, Heinz; Long, Li; Farmerie, William G.; Oakey, Jane; Boomsma, Jacobus J.; Pamilo, Pekka; Yi, Soojin V.; Heinze, Jürgen; Goodisman, Michael A. D.; Farinelli, Laurent; Harshman, Keith; Hulo, Nicolas; Cerutti, Lorenzo; Xenarios, Ioannis; Shoemaker, DeWayne; Keller, Laurent (2011) The genome of the fire ant Solenopsis invicta. .
  • Hannich, J. Thomas; Umebayashi, Kyohei; Riezman, Howard (2011) Distribution and Functions of Sterols and Sphingolipids. .
  • Sankar, Martial; Osmont, Karen S.; Rolcik, Jakub; Gujas, Bojan; Tarkowska, Danuse; Strnad, Miroslav; Xenarios, Ioannis; Hardtke, Christian S. (2011) A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. .
  • Magrane, Michele; UniProt Consortium, (2011) UniProt Knowledgebase: a hub of integrated protein data. .
  • Wartlick, Ortrud; Mumcu, P.; Kicheva, Anna; Bittig, T.; Seum, Carole; Julicher, Frank; Gonzalez-Gaitan, Marcos (2011) Dynamics of Dpp Signaling and Proliferation Control. .
  • Campos, Cláudia; Kamiya, Mako; Banala, Sambashiva; Johnsson, Kai; González-Gaitán, Marcos (2011) Labelling cell structures and tracking cell lineage in zebrafish using SNAP-tag. .
  • Shivapurkar, Rupali; Souza, Cleiton M.; Jeannerat, Damien; Riezman, Howard (2011) An Efficient Method for the Production of Isotopically Enriched Cholesterol for NMR. .
  • Chang-Ileto, Belle; Frere, Samuel G.; Chan, Robin B.; Voronov, Sergey V.; Roux, Aurélien; Di Paolo, Gilbert (2011) Synaptojanin 1-Mediated PI(4,5)P2 Hydrolysis Is Modulated by Membrane Curvature and Facilitates Membrane Fission. .
  • Ternes, Philipp; Wobbe, Tobias; Schwarz, Marnie; Albrecht, Sandra; Feussner, Kirstin; Riezman, Isabelle; Cregg, James M.; Heinz, Ernst; Riezman, Howard; Feussner, Ivo; Warnecke, Dirk (2011) Two Pathways of Sphingolipid Biosynthesis Are Separated in the Yeast Pichia pastoris. .
  • Brach, Thorsten; Specht, Tanja; Kaksonen, Marko (2011) Reassessment of the role of plasma membrane domains in the regulation of vesicular traffic in yeast. .
  • Kukulski, Wanda; Schorb, Martin; Welsch, Sonja; Picco, Andrea; Kaksonen, Marko; Briggs, John A.G. (2011) Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision. .
  • Scott, Cameron C.; Gruenberg, Jean (2011) Ion flux and the function of endosomes and lysosomes: pH is just the start. .
  • Lelong, Emmanuelle; Marchetti, Anna; Guého, Aurélie; Lima, Wanessa C.; Sattler, Natascha; Molmeret, Maëlle; Hagedorn, Monica; Soldati, Thierry; Cosson, Pierre (2011) Role of magnesium and a phagosomal P-type ATPase in intracellular bacterial killing. .
  • Hulo, Chantal; de Castro, Edouard; Masson, Patrick; Bougueleret, Lydie; Bairoch, Amos; Xenarios, Ioannis; Le Mercier, Philippe (2011) ViralZone: a knowledge resource to understand virus diversity. .
  • Papaioannou, Marilena D.; Lagarrigue, Melanie; Vejnar, Charles E.; Rolland, Antoine D.; Kuhne, Francoise; Aubry, Florence; Schaad, Olivier; Fort, Alexandre; Descombes, Patrick; Neerman-Arbez, Marguerite; Guillou, Florian; Zdobnov, Evgeny M.; Pineau, Charles; Nef, Serge (2011) Loss of Dicer in Sertoli Cells Has a Major Impact on the Testicular Proteome of Mice. .